Nature Microbiology publishes the latest research and commentary in all areas of microbiology. Now also at bsky.app/profile/naturemicro…

Our focus issue on communicating microbiology is out now! Read about: 📢importance of communicating microbiology research 👶Bile acids for paediatric sepsis 🦠Drug resistance in Cryptosporidium 💉HIV neutralising antibodies 🌊Ocean metabolomics and more! nature.com/nmicrobiol/volume…
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In a 2016 article, @LAHug_ and colleagues uprooted our conceptualization of the Tree of Life. Anchoring our August focus issue is an update from Hug on what's changed since, and the importance of documenting microbial diversity nature.com/articles/s41564-0…
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📢CALLING ALL MICROBIOLOGISTS📢 Do you use CFU assays? Here is a new high-throughput, low-waste viability assay for microbes All you need is agar media, pipette tips and a standard camera 🧫📸 nature.com/articles/s41564-0… @meyerct6 @danastamo
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📣Have you checked out our special issue on microbial ecology? nature.com/nmicrobiol/volume…
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A special December issue coincides with #COP28 and spotlights: 🌎Climate extremes and microbial ecology 🌍Global warming and pathogen emergence 🌏Microbes and greener plastics 🚨A call to include microbiologists at climate change talks More here 👉nature.com/collections/hdgga…
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Emergency bulletin! 14 journals have co-published an urgent call for the deployment of microbial solutions against climate catastrophe, by @peixotors et al. nature.com/articles/s41564-0…
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.@SorekLab takes the stage. An outlier at #NGI2020 studying the immune systems of bacteria. Or is he? It would appear that mammalian innate immunity has evolutionary roots in microorganisms - you’ll have to agree with @NatureMicrobiol that microorganisms rule ;) !
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Out now in @Nature: Profiling the human intestinal environment under physiological conditions By Dari Shalon, Rebecca Neal Culver, Jessica Grembi, Jacob Folz, David Relman, Kerwyn Casey Huang & colleagues. @DavidRelman nature.com/articles/s41586-0…
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Review by @virome_girl et al. on how #phage underpin the ecology of marine ecosystems: rdcu.be/SO8I
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NEW RESEARCH! 👃🦠 A nasal commensal produces a broad-spectrum, short-lived antimicrobial peptide polyene that inhibits S. aureus in vitro and in vivo @AndreasPeschel1 & colleagues nature.com/articles/s41564-0…
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Our June issue has gone live. In this month's editorial, we advocate for phage therapy as a strategy to combat the global rise of AMR. nature.com/articles/s41564-0…
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You are what you excrete? 💩🧬 Is human DNA in faecal microbiome a problem? The answer seems to be yes. Read this News & Views to learn more, by @KnightLabNews and colleagues👇 nature.com/articles/s41564-0…
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Out Now! FungAMR: a comprehensive database for investigating fungal mutations associated with antimicrobial resistance bit.ly/3UnwlCE #FungalResearch #AntimicrobialResistance #Mycology
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Our November issue has gone live! Tackling AMR together💊 Bacterial histones that bind DNA🧬 Iron-limitation light switch in diatoms💡 A regulator of malaria pathogenesis🪱 nature.com/nmicrobiol/volume…
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Viruses don't infect cells in isolation! NEW review by @SperanzaEmily highlights methods to study virus-host interactions in the infection microenvironment nature.com/articles/s41564-0…
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Wang, Tu et al.: Cyro-electron tomography characterizes the structural changes involved in trans-envelope channel formation during #phage P22 infection of Salmonella: rdcu.be/brESs
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Out Now! Deep learning reveals antibiotics in the archaeal proteome bit.ly/4lpohMM #DeepLearning #ArtificialIntelligence #Antibiotics
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Smith et al. @nature: A new #antibiotic candidate -- optimized arylomycin, G0775, targets bacterial signal peptidase (LepB) and is active against a diverse range of Gram-negative multidrug resistant pathogens: rdcu.be/6wKj
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Consensus Statement: Roadmap for naming uncultivated Archaea and Bacteria nature.com/articles/s41564-0… The authors propose two recommendations for naming prokaryotes that currently lack type material or cultured representatives, and do not have a formal nomenclature system.
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Should I stay or should I go 🦠 lovely new study on bimodal regulation of Pseudomonas aeruginosa biofilm heterogeneity by @Jenal_Lab @biozentrum @UniBasel_en Readcube: rdcu.be/dd8Dg nature.com/articles/s41564-0…
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Second wave of Human #Microbiome Project data @nature; microbial analyses across individuals, body sites & time: nature.com/nature/journal/va…
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NEW RESOURCE 💊🦠 High-throughput transcriptomics of 409 bacteria-drug pairs reveals drivers of gut microbiota perturbation @harriswangnyc @deirdrestela @YimingHuang8 nature.com/articles/s41564-0…
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Machine learning for microbiologists - a useful toolbox for researchers 👇 nature.com/articles/s41579-0…
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OUT NOW: Fetal meconium does not have a detectable microbiota before birth. From the lab of Deborah Sloboda & colleagues @KateKennedy @Sloboda_Lab @surette_m #microbiota Read it here: rdcu.be/ckjSG nature.com/articles/s41564-0…
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OUT NOW: phage resistance in Acinetobacter baumannii results in resensitization to antimicrobials and reduced bacterial fitness in vivo. Could pave the way to next-generation phage therapy @JeremyJBarr Read the article here: rdcu.be/cdn1V nature.com/articles/s41564-0…
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OUT NOW 🏳️‍🌈 @LandonGetz @bfrancescol and @Edel_PLopez said we needed a Pride in Microbiology Network to support 2SLGBTQIA+ microbiologists...so they made one! #PrideMonth nature.com/articles/s41564-0…
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Comment by Parkhill & co: techniques to identify reagent contaminants in #metagenomics and #microbiome studies: rdcu.be/3vU6
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A five-phage combination oral therapy targets IBD-associated Klebsiella pneumoniae resulting in reduced colonic inflammation - with a phase 1 randomized, single-blinded, placebo-controlled clinical trial @Elinav_Lab @SorekLab & co in @CellCellPress cell.com/cell/fulltext/S0092…
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New PERSPECTIVE: A framework for understanding collective microbiome metabolism. By Matthias Huelsmann, Olga Schubert & Martin Ackermann @MicSysEcoLab @ETH_en @EawagResearch nature.com/articles/s41564-0…
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Out Now! Integrating microbial GWAS and single-cell transcriptomics reveals associations between host cell populations and the gut microbiome bit.ly/4cppYqr #Microbiology #GWAS #SingleCellRNAseq
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Out now: Metagenomics-enabled microbial surveillance A Perspective arguing that high throughput methods can improve detection of known and yet-to-emerge pathogens. nature.com/articles/s41564-0…
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Circadian rhythm characterized in Bacillus subtilis, the first circadian rhythm in a non-photosynthetic bacterium. Intriguing that ONLY cells able to form biofilms have robust circadian rhythms: @ScienceAdvances advances.sciencemag.org/cont…
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Submit to us in whichever format you like - on first instance, we care about the data, not how it is packaged
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Out Now! ‘Phollowing’ phage outbreaks in microbiomes with live fluorescence microscopy bit.ly/3Z7vokv #Microbiology #Bacteriophages #PhageOutbreaks
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WE ARE HIRING! If you are a microbiologist with an interest in editorial and publishing, get in touch and apply now: bit.ly/3CSNIjp Closing date: 16th December #microbiolology

ALT Cat Computer GIF

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Print it out and stick it on the wall!👇
SnapShot: Bacterial Immunity @Nitzan_T masterfully organized current knowledge on bacterial immune systems into a single page graphics Out today @CellCellPress : cell.com/cell/fulltext/S0092…
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Out now: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. By Brian Willett, Emma Thomson & colleagues. @emcat1 @CVRbioinfo #omicron Read it here: rdcu.be/cReRB nature.com/articles/s41564-0…
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OUT NOW 📢 A predicted CRISPR-mediated symbiosis between uncultivated archaea by @ProbstLab @AlexJProbst @SarahWater10 @unidue @uniallianz nature.com/articles/s41564-0…
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Variation and transmission of the human gut microbiota across multiple familial generations @jeroenraes out today! nature.com/articles/s41564-0…
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Consensus statement from the Coronaviridae Study Group of the International Committee on Taxonomy of Viruses Naming the 2019 novel coronavirus SARS-CoV-2: rdcu.be/b2rJm #SARSCoV2 #COVID19
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Main results release from the second phase of the Human Microbiome Project (aka HMP2 or iHMP), including the 3 flagship papers in @nature and @NatureMedicine, a perspective & various commentary. All relevant content at this collection site (1/3) nature.com/collections/fiabf…
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Dalia & co: Type IV competence #pilus retraction brings DNA to the #bacteria cell surface for transformation: rdcu.be/VMFq With a 'Behind the Paper' by Courtney Ellison: buff.ly/2MjblbS
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Out now in @NatureMicrobiol: Bdellovibrio predation cycle characterized at nanometre-scale resolution with cryo-electron tomography @MMMKaplan_ @theJensenLab @yiweichang nature.com/articles/s41564-0…
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We are happy to see a very microbiology-heavy issue of @nature 3 papers, 2 N&V, a research highlight & editorial. To quote @baym “This is an unbelievable time to be a microbiologist. It feels like every few months the textbooks need rewriting” nature.com/nature/volumes/56…
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OUT NOW - Streptomyces secretes a siderophore that sensitizes competitor bacteria to phage infection nature.com/articles/s41564-0…
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Working on the #microbiome? 🦠🧫💩 We're hiring for a permanent editor to handle all things microbiome and champion this area for the journal! Role available in New York or Berlin Deadline - 11th December More info here: careers.springernature.com/j…
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Out now! In vitro models that mimic within patient conditions should be used to revitalize antibiotic discovery and development nature.com/articles/s41564-0…
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Eugene Koonin walks us through his thoughts on the origin and evolution of viruses “the most abundant replicating biological entity are viruses” Related reading: great review @NatureRevMicro by @mkrupovic Dolja and Koonin rdcu.be/bGbBs #KSrnavirus
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Check out this new study in @Nature: Fungal infections pose a huge health threat and there are very few specific antifungal drugs. Here, the rational improvement of amphotericin B led to a drug that kills fungi but has low toxicity towards kidney cells🎯 nature.com/articles/s41586-0…
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Anand et al: Pseudogenes can function as an 'adaptive reservoir' and be repaired during laboratory evolution of E. coli: rdcu.be/biQPe
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Out Now! In situ structure of a bacterial flagellar motor at subnanometre resolution reveals adaptations for increased torque bit.ly/40t7rVl #Microbiology #CryoEM #BacterialResearch
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Out Now! Peptidoglycan–outer membrane attachment generates periplasmic pressure to prevent lysis in Gram-negative bacteria bit.ly/4kZA3gF #Peptidoglycan #BacteriaResearch #Microbiology
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OUT NOW Challenges and opportunities in sharing microbiome data and analyses nature.com/articles/s41564-0…
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OUT NOW 👉 @BalskusLab provides metabolic insights into the vaginal microbiome @MicrobialChem @WoolstonLabNEU nature.com/articles/s41564-0…
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OUT NOW👉Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes A study by Jill Banfield & colleagues @BanfieldJill @AdairLBorges @BanfieldLab @igisci read it here: rdcu.be/cOoiq nature.com/articles/s41564-0…
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How covid-19 is accelerating the threat of antimicrobial resistance bmj.com/content/369/bmj.m198…
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OUT NOW: A model based on microbial community metabolomics reveals insights into community assembly and resource competition in vitro by Kc Huang, Taylor Nguyen & co @Stanford nature.com/articles/s41564-0…
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Hugenholtz, Tyson & co: #metagenomics reconstruction of 7903 #bacteria & #archaea genomes, increases diversity 30%, rdcu.be/vKnM
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Excellent video abstract of “Modelling Cryptosporidium infection in human small intestinal and lung organoids” by Heo, Clevers RT al rdcu.be/bVfrf Made by Luis at Nymus3D, via @HansClevers Good visuals are so important in #scicomm!
Hans Clevers
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Our first issue of 2024 is hot off the press... ⚒️ Microbiome mining for abx 🔎 Bdellovibrio prey recognition 🌍 Gender gap in Africa's HIV epidemic 🏥 Candida clinical adaptations 🧬 Precision run-on seq for microbiomes ...all this, and more👇 nature.com/nmicrobiol/volume…
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OUT NOW 🗺️ This degradome atlas for 96 bacterial species will enable better understanding of mechanisms of RNA degradation in bacteria, by @Pelechanolab @scilifelab @karolinskainst et al. nature.com/articles/s41564-0…
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WE ARE HIRING: Passionate about microbiology? We’re looking for an enthusiastic locum editor to join our team for six months. Please RT. Applications close April 7th. nature.com/naturecareers/job…
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Nice new paper in @Nature on interactions between genetic variation in host and microbiota nature.com/articles/s41586-0…
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Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome by Eugene Koonin, Valerian Dolja, @mkrupovic & co nature.com/articles/s41564-0…
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Start teaching mycology! by Freimoser joins Stop neglecting fungi! in our community site naturemicrobiologycommunity.… & rdcu.be/vTkN
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Out now in @NatureMicrobiol: Systematic mining of the human microbiome identifies antimicrobial peptides with diverse activity spectra @Geneticdesigner & colleagues nature.com/articles/s41564-0…
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Out Now! Applying ecological principles to microbiome engineering bit.ly/45mHR6f #Microbiome #Ecology #Sustainability
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Out Now! Aggresomes protect mRNA under stress in Escherichia coli bit.ly/45HP3do #mRNA #EscherichiaColi #Aggresomes
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Out now: Candida albicans extracellular vesicles trigger type I IFN signalling via cGAS and STING @HannahEBrown3 @jmvyasmdphd @VyasLab nature.com/articles/s41564-0…
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Our July issue is out now! 🦠Lessons from a bacterial predator ⛽️Petroleum oxidation by archaea 🪸Coral-algal endosymbiosis 🧠Modelling viral encephalitis in organoids 🥦A call for papers on the microbiome & nutrition ...and more! Check out it out👇 nature.com/nmicrobiol/volume…
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Host-gut microbiota crosstalk predicts neuroinflammation - A quick read News and Views by @QuintanaLabHMS. nature.com/articles/s41564-0…
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